Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 ZNF890P-202ENST00000530367 1156 ntBASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 AC084346.2-201ENST00000607097 949 ntBASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 AL844908.2-201ENST00000609461 460 ntBASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 AC092053.1-201ENST00000605787 1936 ntBASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 AC142381.1-201ENST00000426099 345 ntBASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 PTPA-220ENST00000436883 532 ntTSL 4 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 RAB34-223ENST00000636154 730 ntTSL 2 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
SHROOM4Q9ULL8 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.68
SHROOM4Q9ULL8 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
SHROOM4Q9ULL8 LINC00896-202ENST00000609602 2128 ntBASIC31.76■■■□□ 2.68
SHROOM4Q9ULL8 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 GPER1-207ENST00000619052 571 ntTSL 2 BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 AL353732.1-201ENST00000569618 1459 ntBASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 STX3-203ENST00000529177 1571 ntTSL 2 BASIC31.76■■■□□ 2.67
SHROOM4Q9ULL8 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 RNU1-129P-201ENST00000384064 167 ntBASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 AC027369.6-201ENST00000525520 931 ntBASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 POLE2-203ENST00000553805 496 ntTSL 2 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 U1.21-201ENST00000580816 167 ntBASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 MIR4453-201ENST00000584019 89 ntBASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC31.75■■■□□ 2.67
SHROOM4Q9ULL8 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 AL031055.1-201ENST00000606362 631 ntBASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
SHROOM4Q9ULL8 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 FOS-208ENST00000555686 1496 ntTSL 2 BASIC31.73■■■□□ 2.67
SHROOM4Q9ULL8 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC31.73■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms