Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 AC114341.1-201ENST00000618070 349 ntBASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 PAUPAR-201ENST00000630360 2965 ntBASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 AC024909.3-201ENST00000611513 2257 ntBASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 AC023824.1-201ENST00000562945 2975 ntBASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 AC003669.1-201ENST00000334569 611 ntBASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 AC099336.1-202ENST00000602961 463 ntBASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
CCDC39Q9UFE4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 AC073592.5-201ENST00000624854 528 ntBASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 AC009336.1-201ENST00000608941 1553 ntBASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
CCDC39Q9UFE4 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 KLF4P1-201ENST00000412782 1185 ntBASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC39Q9UFE4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms