Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.55□□□□□ -0.08
COL12A1Q99715 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.55□□□□□ -0.08
COL12A1Q99715 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
COL12A1Q99715 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL12A1Q99715 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC14.55□□□□□ -0.08
COL12A1Q99715 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.55□□□□□ -0.08
COL12A1Q99715 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.55□□□□□ -0.08
COL12A1Q99715 TMEM198B-204ENST00000484016 896 ntBASIC14.55□□□□□ -0.08
COL12A1Q99715 HCG18-245ENST00000602550 559 ntTSL 4 BASIC14.55□□□□□ -0.08
COL12A1Q99715 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 WFDC1-204ENST00000613603 549 ntBASIC14.55□□□□□ -0.08
COL12A1Q99715 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 AC073439.1-201ENST00000624121 1774 ntBASIC14.55□□□□□ -0.08
COL12A1Q99715 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.55□□□□□ -0.08
COL12A1Q99715 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
COL12A1Q99715 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL12A1Q99715 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
COL12A1Q99715 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.55□□□□□ -0.08
COL12A1Q99715 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.55□□□□□ -0.08
COL12A1Q99715 AC093726.1-201ENST00000608064 963 ntBASIC14.55□□□□□ -0.08
COL12A1Q99715 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
COL12A1Q99715 AC009542.2-202ENST00000619004 1067 ntBASIC14.55□□□□□ -0.08
COL12A1Q99715 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.55□□□□□ -0.08
COL12A1Q99715 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.55□□□□□ -0.08
COL12A1Q99715 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.55□□□□□ -0.08
COL12A1Q99715 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC14.55□□□□□ -0.08
COL12A1Q99715 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.55□□□□□ -0.08
COL12A1Q99715 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL12A1Q99715 AL035456.1-201ENST00000456064 1369 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC14.54□□□□□ -0.08
COL12A1Q99715 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.54□□□□□ -0.08
COL12A1Q99715 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.54□□□□□ -0.08
COL12A1Q99715 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.54□□□□□ -0.08
COL12A1Q99715 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.54□□□□□ -0.08
COL12A1Q99715 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL12A1Q99715 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 AL079307.3-201ENST00000556114 283 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC14.54□□□□□ -0.08
COL12A1Q99715 MIR7845-201ENST00000618396 99 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
COL12A1Q99715 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
COL12A1Q99715 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL12A1Q99715 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.54□□□□□ -0.08
COL12A1Q99715 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 AC079328.2-201ENST00000561241 3354 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL12A1Q99715 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC14.54□□□□□ -0.08
COL12A1Q99715 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.54□□□□□ -0.08
COL12A1Q99715 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
COL12A1Q99715 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 BCRP2-202ENST00000447763 634 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.54□□□□□ -0.08
COL12A1Q99715 BCRP6-201ENST00000510112 632 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 BCRP7-201ENST00000511549 544 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 TPRX2P-201ENST00000535362 881 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 AL118558.3-201ENST00000607414 1079 ntBASIC14.54□□□□□ -0.08
COL12A1Q99715 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.54□□□□□ -0.08
COL12A1Q99715 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
COL12A1Q99715 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL12A1Q99715 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC14.53□□□□□ -0.08
COL12A1Q99715 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
COL12A1Q99715 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
COL12A1Q99715 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
COL12A1Q99715 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL12A1Q99715 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC14.53□□□□□ -0.08
COL12A1Q99715 CD276-201ENST00000318424 2738 ntTSL 5 BASIC14.53□□□□□ -0.08
COL12A1Q99715 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms