Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS35Q96QK1 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS35Q96QK1 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS35Q96QK1 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS35Q96QK1 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS35Q96QK1 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
VPS35Q96QK1 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS35Q96QK1 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS35Q96QK1 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
VPS35Q96QK1 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.77■□□□□ 0.27
VPS35Q96QK1 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS35Q96QK1 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 PGAM5P1-201ENST00000518923 814 ntBASIC16.76■□□□□ 0.27
VPS35Q96QK1 AP002490.2-201ENST00000524791 560 ntBASIC16.76■□□□□ 0.27
VPS35Q96QK1 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
VPS35Q96QK1 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS35Q96QK1 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 AC046158.3-201ENST00000624947 2558 ntBASIC16.75■□□□□ 0.27
VPS35Q96QK1 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 HCG4-201ENST00000418983 998 ntBASIC16.75■□□□□ 0.27
VPS35Q96QK1 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 POLD2P1-201ENST00000511220 997 ntBASIC16.75■□□□□ 0.27
VPS35Q96QK1 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 MPDU1-223ENST00000582151 728 ntBASIC16.75■□□□□ 0.27
VPS35Q96QK1 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 AC007064.4-201ENST00000637740 555 ntBASIC16.75■□□□□ 0.27
VPS35Q96QK1 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
VPS35Q96QK1 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.75■□□□□ 0.27
VPS35Q96QK1 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms