Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBE3BQ7Z3V4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
UBE3BQ7Z3V4 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBE3BQ7Z3V4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBE3BQ7Z3V4 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
UBE3BQ7Z3V4 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 AC006277.1-201ENST00000624348 1610 ntBASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.96■□□□□ 0.95
UBE3BQ7Z3V4 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
UBE3BQ7Z3V4 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 GPS2P2-201ENST00000430745 888 ntBASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
UBE3BQ7Z3V4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 IGHV3-62-201ENST00000520057 340 ntBASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 UXT-AS1-201ENST00000590504 1525 ntBASIC20.94■□□□□ 0.94
UBE3BQ7Z3V4 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 CEP83-AS1-201ENST00000623122 2482 ntBASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 AC025678.2-201ENST00000562061 970 ntBASIC20.93■□□□□ 0.94
UBE3BQ7Z3V4 AL138918.1-201ENST00000568306 659 ntBASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms