Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SRP54P61011 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SRP54P61011 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.66■□□□□ 0.26
SRP54P61011 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SRP54P61011 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SRP54P61011 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SRP54P61011 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SRP54P61011 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SRP54P61011 AC012569.1-201ENST00000591191 1524 ntBASIC16.65■□□□□ 0.26
SRP54P61011 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SRP54P61011 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.65■□□□□ 0.26
SRP54P61011 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.65■□□□□ 0.26
SRP54P61011 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SRP54P61011 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.65■□□□□ 0.26
SRP54P61011 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.65■□□□□ 0.26
SRP54P61011 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.65■□□□□ 0.26
SRP54P61011 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.65■□□□□ 0.26
SRP54P61011 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 AC105339.1-204ENST00000636249 355 ntBASIC16.65■□□□□ 0.26
SRP54P61011 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.65■□□□□ 0.26
SRP54P61011 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 AL353732.1-201ENST00000569618 1459 ntBASIC16.65■□□□□ 0.26
SRP54P61011 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.65■□□□□ 0.26
SRP54P61011 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SRP54P61011 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SRP54P61011 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SRP54P61011 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.65■□□□□ 0.26
SRP54P61011 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
SRP54P61011 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SRP54P61011 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
SRP54P61011 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
SRP54P61011 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
SRP54P61011 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.26
SRP54P61011 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.64■□□□□ 0.26
SRP54P61011 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.64■□□□□ 0.25
SRP54P61011 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 AC139713.2-201ENST00000641328 2723 ntBASIC16.64■□□□□ 0.25
SRP54P61011 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 AL121761.2-201ENST00000598007 1648 ntBASIC16.64■□□□□ 0.25
SRP54P61011 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.64■□□□□ 0.25
SRP54P61011 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 HMGA1P7-201ENST00000406908 502 ntBASIC16.64■□□□□ 0.25
SRP54P61011 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.64■□□□□ 0.25
SRP54P61011 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SRP54P61011 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.64■□□□□ 0.25
SRP54P61011 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.64■□□□□ 0.25
SRP54P61011 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.64■□□□□ 0.25
SRP54P61011 AC027796.2-201ENST00000575326 344 ntBASIC16.64■□□□□ 0.25
SRP54P61011 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.64■□□□□ 0.25
SRP54P61011 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.64■□□□□ 0.25
SRP54P61011 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.64■□□□□ 0.25
SRP54P61011 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.64■□□□□ 0.25
SRP54P61011 AC004835.2-201ENST00000603762 682 ntBASIC16.64■□□□□ 0.25
SRP54P61011 AL513210.1-201ENST00000629608 234 ntBASIC16.64■□□□□ 0.25
SRP54P61011 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.64■□□□□ 0.25
SRP54P61011 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SRP54P61011 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.64■□□□□ 0.25
SRP54P61011 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SRP54P61011 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SRP54P61011 TOP3BP1-201ENST00000420768 1380 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms