Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 HIST1H2APS4-201ENST00000362070 348 ntBASIC12.74□□□□□ -0.37
FOXA3P55318 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 COX5BP2-201ENST00000392354 334 ntBASIC12.74□□□□□ -0.37
FOXA3P55318 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 AC007663.1-201ENST00000438948 1240 ntBASIC12.74□□□□□ -0.37
FOXA3P55318 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
FOXA3P55318 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC12.74□□□□□ -0.37
FOXA3P55318 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC12.74□□□□□ -0.37
FOXA3P55318 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 REXO1L10P-201ENST00000615707 1290 ntBASIC12.74□□□□□ -0.37
FOXA3P55318 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC12.74□□□□□ -0.37
FOXA3P55318 REXO1L12P-201ENST00000622156 912 ntBASIC12.74□□□□□ -0.37
FOXA3P55318 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 AL645728.1-201ENST00000366221 2101 ntBASIC12.74□□□□□ -0.37
FOXA3P55318 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 AL391256.1-201ENST00000443260 1855 ntBASIC12.74□□□□□ -0.37
FOXA3P55318 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
FOXA3P55318 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
FOXA3P55318 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC12.74□□□□□ -0.37
FOXA3P55318 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 FRMD8P1-201ENST00000440433 1524 ntBASIC12.73□□□□□ -0.37
FOXA3P55318 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
FOXA3P55318 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 ENSA-206ENST00000361631 725 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 HLA-L-209ENST00000420110 1011 ntBASIC12.73□□□□□ -0.37
FOXA3P55318 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC12.73□□□□□ -0.37
FOXA3P55318 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC12.73□□□□□ -0.37
FOXA3P55318 SPIB-206ENST00000596074 847 ntTSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 AC116562.4-202ENST00000641738 218 ntBASIC12.73□□□□□ -0.37
FOXA3P55318 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
FOXA3P55318 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
FOXA3P55318 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
FOXA3P55318 AC099063.4-201ENST00000641099 1602 ntBASIC12.73□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms