Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CDH4P55283 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CDH4P55283 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CDH4P55283 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDH4P55283 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.21■□□□□ 0.35
CDH4P55283 AC105020.1-201ENST00000435356 2205 ntBASIC17.21■□□□□ 0.35
CDH4P55283 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CDH4P55283 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
CDH4P55283 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH4P55283 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH4P55283 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CDH4P55283 PMS2P4-201ENST00000412466 1052 ntBASIC17.21■□□□□ 0.35
CDH4P55283 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH4P55283 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.21■□□□□ 0.35
CDH4P55283 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.21■□□□□ 0.35
CDH4P55283 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH4P55283 AC092902.6-201ENST00000641783 218 ntBASIC17.21■□□□□ 0.35
CDH4P55283 AL139011.1-202ENST00000642063 584 ntBASIC17.21■□□□□ 0.35
CDH4P55283 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.21■□□□□ 0.35
CDH4P55283 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 AC005915.1-201ENST00000624912 2018 ntBASIC17.21■□□□□ 0.35
CDH4P55283 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CDH4P55283 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.21■□□□□ 0.35
CDH4P55283 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CDH4P55283 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDH4P55283 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.21■□□□□ 0.34
CDH4P55283 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.21■□□□□ 0.34
CDH4P55283 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.34
CDH4P55283 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.21■□□□□ 0.34
CDH4P55283 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CDH4P55283 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
CDH4P55283 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH4P55283 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CDH4P55283 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH4P55283 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH4P55283 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.2■□□□□ 0.34
CDH4P55283 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 ELL2P1-201ENST00000413990 1906 ntBASIC17.2■□□□□ 0.34
CDH4P55283 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH4P55283 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.2■□□□□ 0.34
CDH4P55283 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.2■□□□□ 0.34
CDH4P55283 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.2■□□□□ 0.34
CDH4P55283 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC17.2■□□□□ 0.34
CDH4P55283 AC006538.3-201ENST00000612495 578 ntBASIC17.2■□□□□ 0.34
CDH4P55283 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH4P55283 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.2■□□□□ 0.34
CDH4P55283 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.2■□□□□ 0.34
CDH4P55283 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.2■□□□□ 0.34
CDH4P55283 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CDH4P55283 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.19■□□□□ 0.34
CDH4P55283 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH4P55283 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CDH4P55283 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH4P55283 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDH4P55283 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CDH4P55283 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH4P55283 AC012313.1-201ENST00000593393 3059 ntBASIC17.19■□□□□ 0.34
CDH4P55283 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CDH4P55283 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.19■□□□□ 0.34
CDH4P55283 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms