Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.1■□□□□ 0.49
VCPP55072 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
VCPP55072 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.1■□□□□ 0.49
VCPP55072 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.1■□□□□ 0.49
VCPP55072 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.1■□□□□ 0.49
VCPP55072 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.1■□□□□ 0.49
VCPP55072 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.1■□□□□ 0.49
VCPP55072 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
VCPP55072 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
VCPP55072 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCPP55072 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
VCPP55072 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
VCPP55072 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.09■□□□□ 0.49
VCPP55072 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 SIGLEC16-201ENST00000599858 1437 ntBASIC18.09■□□□□ 0.49
VCPP55072 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 ELK2BP-201ENST00000415014 1224 ntBASIC18.09■□□□□ 0.49
VCPP55072 AL020989.1-201ENST00000422979 469 ntBASIC18.09■□□□□ 0.49
VCPP55072 FAM58CP-201ENST00000435741 640 ntBASIC18.09■□□□□ 0.49
VCPP55072 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 AC109322.1-201ENST00000524499 1264 ntBASIC18.09■□□□□ 0.49
VCPP55072 AC005225.4-201ENST00000557330 545 ntBASIC18.09■□□□□ 0.49
VCPP55072 DUX4L17-201ENST00000557360 1267 ntBASIC18.09■□□□□ 0.49
VCPP55072 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.09■□□□□ 0.49
VCPP55072 AL390955.2-201ENST00000603032 514 ntBASIC18.09■□□□□ 0.49
VCPP55072 AJ011932.1-201ENST00000621707 465 ntBASIC18.09■□□□□ 0.49
VCPP55072 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 AC060834.1-201ENST00000443027 2032 ntBASIC18.09■□□□□ 0.49
VCPP55072 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
VCPP55072 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
VCPP55072 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCPP55072 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.08■□□□□ 0.49
VCPP55072 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VCPP55072 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VCPP55072 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VCPP55072 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VCPP55072 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VCPP55072 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.49
VCPP55072 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VCPP55072 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VCPP55072 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
VCPP55072 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VCPP55072 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCPP55072 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCPP55072 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VCPP55072 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VCPP55072 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 PDPK2P-202ENST00000562415 1191 ntBASIC18.08■□□□□ 0.48
VCPP55072 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 AC004835.2-201ENST00000603762 682 ntBASIC18.08■□□□□ 0.48
VCPP55072 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.08■□□□□ 0.48
VCPP55072 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
VCPP55072 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.08■□□□□ 0.48
VCPP55072 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.08■□□□□ 0.48
VCPP55072 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCPP55072 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCPP55072 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCPP55072 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCPP55072 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCPP55072 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
VCPP55072 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
VCPP55072 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VCPP55072 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms