Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MIR658-201ENST00000385210 100 ntBASIC21.91■■□□□ 1.1
COL18A1P39060 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC21.91■■□□□ 1.1
COL18A1P39060 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC21.91■■□□□ 1.1
COL18A1P39060 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC21.91■■□□□ 1.1
COL18A1P39060 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC21.91■■□□□ 1.1
COL18A1P39060 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL18A1P39060 USP32P1-208ENST00000506594 1164 ntBASIC21.91■■□□□ 1.1
COL18A1P39060 FUZ-207ENST00000526575 482 ntTSL 4 BASIC21.91■■□□□ 1.1
COL18A1P39060 TPRX2P-201ENST00000535362 881 ntBASIC21.91■■□□□ 1.1
COL18A1P39060 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC21.91■■□□□ 1.1
COL18A1P39060 MIR4259-201ENST00000584466 101 ntBASIC21.91■■□□□ 1.1
COL18A1P39060 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL18A1P39060 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.91■■□□□ 1.1
COL18A1P39060 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
COL18A1P39060 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC21.91■■□□□ 1.1
COL18A1P39060 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL18A1P39060 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
COL18A1P39060 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
COL18A1P39060 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 ANKRD19P-201ENST00000338192 862 ntBASIC21.9■■□□□ 1.1
COL18A1P39060 OSM-203ENST00000403463 464 ntTSL 3 BASIC21.9■■□□□ 1.1
COL18A1P39060 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC21.9■■□□□ 1.1
COL18A1P39060 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC21.9■■□□□ 1.1
COL18A1P39060 AC024267.1-201ENST00000582320 895 ntBASIC21.9■■□□□ 1.1
COL18A1P39060 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC21.9■■□□□ 1.1
COL18A1P39060 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
COL18A1P39060 AL033527.5-202ENST00000641632 1098 ntBASIC21.9■■□□□ 1.1
COL18A1P39060 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC21.9■■□□□ 1.1
COL18A1P39060 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC21.9■■□□□ 1.1
COL18A1P39060 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
COL18A1P39060 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.9■■□□□ 1.1
COL18A1P39060 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
COL18A1P39060 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC21.9■■□□□ 1.1
COL18A1P39060 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL18A1P39060 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
COL18A1P39060 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC21.89■■□□□ 1.1
COL18A1P39060 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.89■■□□□ 1.1
COL18A1P39060 AC087499.6-201ENST00000411576 835 ntBASIC21.89■■□□□ 1.1
COL18A1P39060 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
COL18A1P39060 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC21.89■■□□□ 1.1
COL18A1P39060 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC21.89■■□□□ 1.1
COL18A1P39060 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC21.89■■□□□ 1.1
COL18A1P39060 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC21.89■■□□□ 1.1
COL18A1P39060 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.89■■□□□ 1.1
COL18A1P39060 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC21.89■■□□□ 1.1
COL18A1P39060 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL18A1P39060 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC21.89■■□□□ 1.1
COL18A1P39060 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL18A1P39060 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
COL18A1P39060 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC21.89■■□□□ 1.09
COL18A1P39060 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
COL18A1P39060 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL18A1P39060 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
COL18A1P39060 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
COL18A1P39060 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL18A1P39060 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL18A1P39060 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL18A1P39060 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC21.89■■□□□ 1.09
COL18A1P39060 NAA38-206ENST00000576384 424 ntTSL 2 BASIC21.89■■□□□ 1.09
COL18A1P39060 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC21.89■■□□□ 1.09
COL18A1P39060 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC21.89■■□□□ 1.09
COL18A1P39060 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC21.89■■□□□ 1.09
COL18A1P39060 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.89■■□□□ 1.09
COL18A1P39060 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC21.89■■□□□ 1.09
COL18A1P39060 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC21.88■■□□□ 1.09
COL18A1P39060 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
COL18A1P39060 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC21.88■■□□□ 1.09
COL18A1P39060 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.88■■□□□ 1.09
COL18A1P39060 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC21.88■■□□□ 1.09
COL18A1P39060 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
COL18A1P39060 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms