Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRCA1P38398 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCA1P38398 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCA1P38398 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC20.17■□□□□ 0.82
BRCA1P38398 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCA1P38398 AC103810.3-201ENST00000583567 96 ntBASIC20.17■□□□□ 0.82
BRCA1P38398 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC20.17■□□□□ 0.82
BRCA1P38398 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20.17■□□□□ 0.82
BRCA1P38398 AC009542.2-202ENST00000619004 1067 ntBASIC20.17■□□□□ 0.82
BRCA1P38398 PPA1-206ENST00000625364 644 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCA1P38398 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.17■□□□□ 0.82
BRCA1P38398 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
BRCA1P38398 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCA1P38398 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
BRCA1P38398 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BRCA1P38398 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
BRCA1P38398 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BRCA1P38398 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
BRCA1P38398 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC20.16■□□□□ 0.82
BRCA1P38398 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCA1P38398 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
BRCA1P38398 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC20.16■□□□□ 0.82
BRCA1P38398 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC20.16■□□□□ 0.82
BRCA1P38398 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC20.16■□□□□ 0.82
BRCA1P38398 RARRES2P5-201ENST00000564013 466 ntBASIC20.16■□□□□ 0.82
BRCA1P38398 PIGL-212ENST00000581006 554 ntTSL 4 BASIC20.16■□□□□ 0.82
BRCA1P38398 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCA1P38398 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
BRCA1P38398 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCA1P38398 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC20.16■□□□□ 0.82
BRCA1P38398 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 RPL7P3-201ENST00000441388 714 ntBASIC20.16■□□□□ 0.82
BRCA1P38398 KLF2P4-201ENST00000451959 1225 ntBASIC20.16■□□□□ 0.82
BRCA1P38398 RNA5SP423-201ENST00000517127 109 ntBASIC20.16■□□□□ 0.82
BRCA1P38398 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC20.16■□□□□ 0.82
BRCA1P38398 GNRHR2-203ENST00000581100 1187 ntBASIC20.16■□□□□ 0.82
BRCA1P38398 AL158212.4-201ENST00000624062 1286 ntBASIC20.16■□□□□ 0.82
BRCA1P38398 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20.16■□□□□ 0.82
BRCA1P38398 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BRCA1P38398 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRCA1P38398 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRCA1P38398 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
BRCA1P38398 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.15■□□□□ 0.82
BRCA1P38398 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRCA1P38398 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRCA1P38398 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.15■□□□□ 0.82
BRCA1P38398 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC20.15■□□□□ 0.82
BRCA1P38398 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20.15■□□□□ 0.82
BRCA1P38398 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.15■□□□□ 0.82
BRCA1P38398 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC20.15■□□□□ 0.82
BRCA1P38398 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC20.15■□□□□ 0.82
BRCA1P38398 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
BRCA1P38398 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
BRCA1P38398 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
BRCA1P38398 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
BRCA1P38398 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
BRCA1P38398 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.15■□□□□ 0.82
BRCA1P38398 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
BRCA1P38398 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
BRCA1P38398 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.14■□□□□ 0.82
BRCA1P38398 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
BRCA1P38398 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC20.14■□□□□ 0.82
BRCA1P38398 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
BRCA1P38398 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
BRCA1P38398 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC20.14■□□□□ 0.81
BRCA1P38398 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
BRCA1P38398 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC20.14■□□□□ 0.81
BRCA1P38398 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.14■□□□□ 0.81
BRCA1P38398 FO681548.1-201ENST00000455617 1132 ntBASIC20.14■□□□□ 0.81
BRCA1P38398 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC20.14■□□□□ 0.81
BRCA1P38398 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC20.14■□□□□ 0.81
BRCA1P38398 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC20.14■□□□□ 0.81
BRCA1P38398 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
BRCA1P38398 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.14■□□□□ 0.81
BRCA1P38398 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
BRCA1P38398 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.14■□□□□ 0.81
BRCA1P38398 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
BRCA1P38398 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BRCA1P38398 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms