Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL8A1P27658 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL8A1P27658 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
COL8A1P27658 AL135999.2-201ENST00000622438 1686 ntBASIC14.71□□□□□ -0.05
COL8A1P27658 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL8A1P27658 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
COL8A1P27658 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL8A1P27658 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
COL8A1P27658 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.71□□□□□ -0.05
COL8A1P27658 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL8A1P27658 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.71□□□□□ -0.05
COL8A1P27658 HLA-DPB2-205ENST00000435074 1188 ntBASIC14.71□□□□□ -0.05
COL8A1P27658 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.71□□□□□ -0.05
COL8A1P27658 WASH4P-201ENST00000564273 1246 ntBASIC14.71□□□□□ -0.05
COL8A1P27658 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL8A1P27658 WASH6P-202ENST00000359512 1437 ntBASIC14.71□□□□□ -0.05
COL8A1P27658 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL8A1P27658 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL8A1P27658 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL8A1P27658 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL8A1P27658 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL8A1P27658 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL8A1P27658 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL8A1P27658 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 COMP-202ENST00000425807 2292 ntTSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 AC009477.1-201ENST00000452936 217 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.7□□□□□ -0.06
COL8A1P27658 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.7□□□□□ -0.06
COL8A1P27658 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.7□□□□□ -0.06
COL8A1P27658 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.7□□□□□ -0.06
COL8A1P27658 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.7□□□□□ -0.06
COL8A1P27658 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.7□□□□□ -0.06
COL8A1P27658 AC008494.3-201ENST00000606615 944 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 AC018529.1-201ENST00000613063 361 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 AC004840.1-201ENST00000636359 365 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.7□□□□□ -0.06
COL8A1P27658 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 AL390961.4-201ENST00000623958 2535 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
COL8A1P27658 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 AC009113.1-201ENST00000570267 2443 ntBASIC14.7□□□□□ -0.06
COL8A1P27658 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL8A1P27658 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
COL8A1P27658 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 MYCLP1-201ENST00000372451 1075 ntBASIC14.69□□□□□ -0.06
COL8A1P27658 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
COL8A1P27658 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC14.69□□□□□ -0.06
COL8A1P27658 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL8A1P27658 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 BCYRN1-201ENST00000418539 200 ntBASIC14.69□□□□□ -0.06
COL8A1P27658 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.69□□□□□ -0.06
COL8A1P27658 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.69□□□□□ -0.06
COL8A1P27658 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.69□□□□□ -0.06
COL8A1P27658 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms