Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH3P22223 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH3P22223 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH3P22223 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CDH3P22223 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
CDH3P22223 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.62■□□□□ 0.25
CDH3P22223 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.62■□□□□ 0.25
CDH3P22223 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH3P22223 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 AL591424.1-201ENST00000442569 1213 ntBASIC16.62■□□□□ 0.25
CDH3P22223 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.62■□□□□ 0.25
CDH3P22223 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH3P22223 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH3P22223 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.62■□□□□ 0.25
CDH3P22223 MIR4751-201ENST00000578027 74 ntBASIC16.62■□□□□ 0.25
CDH3P22223 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
CDH3P22223 PCDHA1-201ENST00000378133 2726 ntBASIC16.62■□□□□ 0.25
CDH3P22223 LINC00554-201ENST00000564841 3011 ntBASIC16.62■□□□□ 0.25
CDH3P22223 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 PMS2P7-201ENST00000506558 1336 ntBASIC16.62■□□□□ 0.25
CDH3P22223 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CDH3P22223 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.62■□□□□ 0.25
CDH3P22223 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CDH3P22223 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CDH3P22223 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH3P22223 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
CDH3P22223 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.61■□□□□ 0.25
CDH3P22223 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CDH3P22223 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 PTCHD3P3-201ENST00000403073 906 ntBASIC16.61■□□□□ 0.25
CDH3P22223 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.61■□□□□ 0.25
CDH3P22223 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.61■□□□□ 0.25
CDH3P22223 AC007967.2-201ENST00000432613 625 ntBASIC16.61■□□□□ 0.25
CDH3P22223 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.61■□□□□ 0.25
CDH3P22223 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.61■□□□□ 0.25
CDH3P22223 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
CDH3P22223 AC008667.4-201ENST00000607370 168 ntBASIC16.61■□□□□ 0.25
CDH3P22223 FAM197Y3-203ENST00000618346 717 ntBASIC16.61■□□□□ 0.25
CDH3P22223 AL805961.1-202ENST00000641562 540 ntBASIC16.61■□□□□ 0.25
CDH3P22223 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.61■□□□□ 0.25
CDH3P22223 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
CDH3P22223 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CDH3P22223 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CDH3P22223 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
CDH3P22223 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.6■□□□□ 0.25
CDH3P22223 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
CDH3P22223 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CDH3P22223 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CDH3P22223 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CDH3P22223 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.6■□□□□ 0.25
CDH3P22223 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.6■□□□□ 0.25
CDH3P22223 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.6■□□□□ 0.25
CDH3P22223 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.6■□□□□ 0.25
CDH3P22223 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CDH3P22223 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.6■□□□□ 0.25
CDH3P22223 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.6■□□□□ 0.25
CDH3P22223 KRT18P3-201ENST00000451602 1288 ntBASIC16.6■□□□□ 0.25
CDH3P22223 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms