Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC26.79■■□□□ 1.88
CHD1O14646 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC26.79■■□□□ 1.88
CHD1O14646 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC26.79■■□□□ 1.88
CHD1O14646 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC26.79■■□□□ 1.88
CHD1O14646 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC26.79■■□□□ 1.88
CHD1O14646 WIZP1-201ENST00000531444 2299 ntBASIC26.79■■□□□ 1.88
CHD1O14646 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC26.79■■□□□ 1.88
CHD1O14646 AMT-232ENST00000636199 1546 ntTSL 5 BASIC26.79■■□□□ 1.88
CHD1O14646 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC26.79■■□□□ 1.88
CHD1O14646 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC26.79■■□□□ 1.88
CHD1O14646 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC26.79■■□□□ 1.88
CHD1O14646 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
CHD1O14646 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 AC104596.2-201ENST00000512793 793 ntBASIC26.79■■□□□ 1.88
CHD1O14646 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 BRI3BPP1-201ENST00000594224 787 ntBASIC26.79■■□□□ 1.88
CHD1O14646 AC020765.3-201ENST00000613051 740 ntBASIC26.79■■□□□ 1.88
CHD1O14646 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 MIR6069-201ENST00000620069 79 ntBASIC26.79■■□□□ 1.88
CHD1O14646 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CHD1O14646 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC26.79■■□□□ 1.88
CHD1O14646 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC26.78■■□□□ 1.88
CHD1O14646 HNRNPA1P48-201ENST00000562726 1377 ntBASIC26.78■■□□□ 1.88
CHD1O14646 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC26.78■■□□□ 1.88
CHD1O14646 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CHD1O14646 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC26.78■■□□□ 1.88
CHD1O14646 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC26.78■■□□□ 1.88
CHD1O14646 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CHD1O14646 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
CHD1O14646 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CHD1O14646 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CHD1O14646 GGCT-203ENST00000409144 836 ntTSL 2 BASIC26.78■■□□□ 1.88
CHD1O14646 AC007969.1-201ENST00000433675 447 ntBASIC26.78■■□□□ 1.88
CHD1O14646 NEU3-202ENST00000526068 431 ntTSL 2 BASIC26.78■■□□□ 1.88
CHD1O14646 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CHD1O14646 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC26.78■■□□□ 1.88
CHD1O14646 AC124283.3-201ENST00000570869 594 ntBASIC26.78■■□□□ 1.88
CHD1O14646 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC26.78■■□□□ 1.88
CHD1O14646 AL021920.2-201ENST00000624828 1351 ntBASIC26.78■■□□□ 1.88
CHD1O14646 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC26.78■■□□□ 1.88
CHD1O14646 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC26.78■■□□□ 1.88
CHD1O14646 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
CHD1O14646 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC26.77■■□□□ 1.88
CHD1O14646 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC26.77■■□□□ 1.88
CHD1O14646 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC26.77■■□□□ 1.88
CHD1O14646 BCRP2-202ENST00000447763 634 ntBASIC26.77■■□□□ 1.88
CHD1O14646 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 BCRP6-201ENST00000510112 632 ntBASIC26.77■■□□□ 1.88
CHD1O14646 BCRP7-201ENST00000511549 544 ntBASIC26.77■■□□□ 1.88
CHD1O14646 RPS15-212ENST00000593052 629 ntTSL 2 BASIC26.77■■□□□ 1.88
CHD1O14646 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CHD1O14646 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
CHD1O14646 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.88
CHD1O14646 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC26.76■■□□□ 1.88
CHD1O14646 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
CHD1O14646 HARS-202ENST00000415192 1401 ntTSL 2 BASIC26.76■■□□□ 1.88
CHD1O14646 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC26.76■■□□□ 1.88
CHD1O14646 KRT8P22-201ENST00000562317 1415 ntBASIC26.76■■□□□ 1.88
CHD1O14646 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC26.76■■□□□ 1.88
CHD1O14646 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC26.76■■□□□ 1.88
CHD1O14646 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
CHD1O14646 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
CHD1O14646 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC26.76■■□□□ 1.87
CHD1O14646 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC26.76■■□□□ 1.87
CHD1O14646 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC26.76■■□□□ 1.87
CHD1O14646 MGST3-203ENST00000367885 680 ntTSL 2 BASIC26.76■■□□□ 1.87
CHD1O14646 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CHD1O14646 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
CHD1O14646 AC106760.1-201ENST00000508690 800 ntBASIC26.76■■□□□ 1.87
CHD1O14646 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC26.76■■□□□ 1.87
CHD1O14646 LINC01115-203ENST00000606068 577 ntBASIC26.76■■□□□ 1.87
CHD1O14646 U62317.3-201ENST00000608319 855 ntBASIC26.76■■□□□ 1.87
CHD1O14646 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CHD1O14646 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
CHD1O14646 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC26.75■■□□□ 1.87
CHD1O14646 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
CHD1O14646 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CHD1O14646 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC26.75■■□□□ 1.87
CHD1O14646 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC26.75■■□□□ 1.87
CHD1O14646 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC26.75■■□□□ 1.87
CHD1O14646 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC26.75■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms