Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 SIGLEC30P-201ENST00000455569 941 ntBASIC13.71□□□□□ -0.21
FOXA2Q9Y261 SCARNA2-201ENST00000458748 420 ntBASIC13.71□□□□□ -0.21
FOXA2Q9Y261 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 MTDHP3-201ENST00000594186 672 ntBASIC13.71□□□□□ -0.21
FOXA2Q9Y261 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 AL355877.3-201ENST00000622820 899 ntBASIC13.71□□□□□ -0.21
FOXA2Q9Y261 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
FOXA2Q9Y261 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.71□□□□□ -0.22
FOXA2Q9Y261 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 SPDYE21P-201ENST00000413323 827 ntBASIC13.7□□□□□ -0.22
FOXA2Q9Y261 AL020989.1-201ENST00000422979 469 ntBASIC13.7□□□□□ -0.22
FOXA2Q9Y261 FAAHP1-202ENST00000446499 1238 ntBASIC13.7□□□□□ -0.22
FOXA2Q9Y261 UNC93B7-201ENST00000509439 705 ntBASIC13.7□□□□□ -0.22
FOXA2Q9Y261 BMF-207ENST00000559701 630 ntTSL 3 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 IRF5-214ENST00000613821 595 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 AL139288.1-201ENST00000623748 933 ntBASIC13.7□□□□□ -0.22
FOXA2Q9Y261 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC13.7□□□□□ -0.22
FOXA2Q9Y261 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 AC079776.2-201ENST00000641154 1609 ntBASIC13.69□□□□□ -0.22
FOXA2Q9Y261 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 AL356309.3-201ENST00000624132 1934 ntBASIC13.69□□□□□ -0.22
FOXA2Q9Y261 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms