Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CNTN3Q9P232 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
CNTN3Q9P232 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CNTN3Q9P232 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CNTN3Q9P232 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.13■□□□□ 0.49
CNTN3Q9P232 AC060834.1-201ENST00000443027 2032 ntBASIC18.13■□□□□ 0.49
CNTN3Q9P232 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.13■□□□□ 0.49
CNTN3Q9P232 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.13■□□□□ 0.49
CNTN3Q9P232 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CNTN3Q9P232 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 AC006277.1-201ENST00000624348 1610 ntBASIC18.12■□□□□ 0.49
CNTN3Q9P232 LINC00895-201ENST00000629028 1637 ntBASIC18.12■□□□□ 0.49
CNTN3Q9P232 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.12■□□□□ 0.49
CNTN3Q9P232 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 RN7SL589P-201ENST00000481268 310 ntBASIC18.12■□□□□ 0.49
CNTN3Q9P232 KRT8P48-201ENST00000515599 1220 ntBASIC18.12■□□□□ 0.49
CNTN3Q9P232 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 AC027612.4-201ENST00000605371 583 ntBASIC18.12■□□□□ 0.49
CNTN3Q9P232 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 AKAP8P1-201ENST00000434743 1349 ntBASIC18.12■□□□□ 0.49
CNTN3Q9P232 PCDHB17P-201ENST00000539533 2393 ntBASIC18.12■□□□□ 0.49
CNTN3Q9P232 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.12■□□□□ 0.49
CNTN3Q9P232 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CNTN3Q9P232 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 TFAMP1-201ENST00000412727 736 ntBASIC18.11■□□□□ 0.49
CNTN3Q9P232 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 AL135744.1-201ENST00000565098 629 ntBASIC18.11■□□□□ 0.49
CNTN3Q9P232 AC004835.2-201ENST00000603762 682 ntBASIC18.11■□□□□ 0.49
CNTN3Q9P232 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CNTN3Q9P232 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CNTN3Q9P232 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CNTN3Q9P232 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms