Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 BCRP1-201ENST00000444246 691 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 SPDYE11-202ENST00000450699 704 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 FAM86C2P-203ENST00000528684 1004 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 SPDYE9P-201ENST00000570642 692 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 LINC00896-202ENST00000609602 2128 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 SPDYE10P-202ENST00000612005 668 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 SPDYE8P-202ENST00000612377 668 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 GNAS-203ENST00000306120 1878 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 AL355312.1-201ENST00000407115 2176 ntBASIC17.49■□□□□ 0.39
HPS4Q9NQG7 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HPS4Q9NQG7 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 HMGA1P7-201ENST00000406908 502 ntBASIC17.48■□□□□ 0.39
HPS4Q9NQG7 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.48■□□□□ 0.39
HPS4Q9NQG7 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 AC079140.1-201ENST00000508039 487 ntBASIC17.48■□□□□ 0.39
HPS4Q9NQG7 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 AC243562.1-201ENST00000560672 389 ntBASIC17.48■□□□□ 0.39
HPS4Q9NQG7 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 AC005498.2-205ENST00000593218 784 ntBASIC17.48■□□□□ 0.39
HPS4Q9NQG7 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HPS4Q9NQG7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 TFAMP1-201ENST00000412727 736 ntBASIC17.47■□□□□ 0.39
HPS4Q9NQG7 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 AC005237.2-201ENST00000434368 219 ntBASIC17.47■□□□□ 0.39
HPS4Q9NQG7 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.47■□□□□ 0.39
HPS4Q9NQG7 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms