Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 AC099522.2-201ENST00000607001 744 ntBASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 AL645728.2-201ENST00000641974 660 ntBASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TM9SF3Q9HD45 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 AL627223.1-201ENST00000416693 442 ntBASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 AL671277.1-201ENST00000429656 993 ntBASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 BCRP1-201ENST00000444246 691 ntBASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 FAM86C2P-203ENST00000528684 1004 ntBASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
TM9SF3Q9HD45 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
TM9SF3Q9HD45 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TM9SF3Q9HD45 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.89■□□□□ 0.3
TM9SF3Q9HD45 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
TM9SF3Q9HD45 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.3
TM9SF3Q9HD45 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 KRT8P48-201ENST00000515599 1220 ntBASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 AL096865.1-201ENST00000606796 927 ntBASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TM9SF3Q9HD45 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TM9SF3Q9HD45 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms