Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 NUS1P1-201ENST00000446295 882 ntBASIC18.29■□□□□ 0.52
CCDC42Q96M95 MINOS1P3-201ENST00000457048 203 ntBASIC18.29■□□□□ 0.52
CCDC42Q96M95 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 AC148477.5-201ENST00000625164 1645 ntBASIC18.29■□□□□ 0.52
CCDC42Q96M95 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 AC233702.3-201ENST00000578656 1387 ntBASIC18.29■□□□□ 0.52
CCDC42Q96M95 AC016734.2-201ENST00000624325 1377 ntBASIC18.29■□□□□ 0.52
CCDC42Q96M95 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC42Q96M95 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CCDC42Q96M95 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 RN7SL850P-201ENST00000579959 291 ntBASIC18.28■□□□□ 0.52
CCDC42Q96M95 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 Z69720.1-201ENST00000601483 472 ntBASIC18.28■□□□□ 0.52
CCDC42Q96M95 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC42Q96M95 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.28■□□□□ 0.52
CCDC42Q96M95 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC42Q96M95 KRT18P1-202ENST00000452408 1331 ntBASIC18.27■□□□□ 0.52
CCDC42Q96M95 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC42Q96M95 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC42Q96M95 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC42Q96M95 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC42Q96M95 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 DUX4L17-201ENST00000557360 1267 ntBASIC18.27■□□□□ 0.52
CCDC42Q96M95 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CCDC42Q96M95 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.27■□□□□ 0.52
CCDC42Q96M95 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC42Q96M95 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CCDC42Q96M95 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms