Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.87■□□□□ 0.29
TTC28Q96AY4 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 AFG3L1P-217ENST00000557444 2447 ntBASIC16.87■□□□□ 0.29
TTC28Q96AY4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 CLK3P2-201ENST00000427566 1453 ntBASIC16.87■□□□□ 0.29
TTC28Q96AY4 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 AC068587.3-201ENST00000526613 355 ntBASIC16.87■□□□□ 0.29
TTC28Q96AY4 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 IQSEC3P1-201ENST00000538799 536 ntBASIC16.87■□□□□ 0.29
TTC28Q96AY4 PTP4A1P2-201ENST00000546033 454 ntBASIC16.87■□□□□ 0.29
TTC28Q96AY4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TTC28Q96AY4 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.87■□□□□ 0.29
TTC28Q96AY4 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 KRT90P-201ENST00000549264 1064 ntBASIC16.86■□□□□ 0.29
TTC28Q96AY4 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 AC244669.2-201ENST00000612320 853 ntBASIC16.86■□□□□ 0.29
TTC28Q96AY4 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
TTC28Q96AY4 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.86■□□□□ 0.29
TTC28Q96AY4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TTC28Q96AY4 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.85■□□□□ 0.29
TTC28Q96AY4 ANO7L1-203ENST00000602586 1720 ntBASIC16.85■□□□□ 0.29
TTC28Q96AY4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TTC28Q96AY4 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms