Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP3Q7Z494 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP3Q7Z494 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC22.66■■□□□ 1.22
NPHP3Q7Z494 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP3Q7Z494 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC22.66■■□□□ 1.22
NPHP3Q7Z494 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC22.66■■□□□ 1.22
NPHP3Q7Z494 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP3Q7Z494 AC133963.1-201ENST00000504166 1679 ntBASIC22.66■■□□□ 1.22
NPHP3Q7Z494 AC004408.2-201ENST00000623613 2777 ntBASIC22.65■■□□□ 1.22
NPHP3Q7Z494 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 MPV17-208ENST00000405076 603 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 MEP1AP4-201ENST00000423244 1087 ntBASIC22.65■■□□□ 1.22
NPHP3Q7Z494 MYCLP2-201ENST00000449268 967 ntBASIC22.65■■□□□ 1.22
NPHP3Q7Z494 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 ELK1P1-201ENST00000485699 580 ntBASIC22.65■■□□□ 1.22
NPHP3Q7Z494 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 REXO1L6P-201ENST00000603433 1515 ntBASIC22.65■■□□□ 1.22
NPHP3Q7Z494 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP3Q7Z494 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 FAM86MP-201ENST00000340703 885 ntBASIC22.64■■□□□ 1.22
NPHP3Q7Z494 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 HIST1H2BPS3-201ENST00000419683 341 ntBASIC22.64■■□□□ 1.22
NPHP3Q7Z494 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 AC092552.1-201ENST00000547243 906 ntBASIC22.64■■□□□ 1.22
NPHP3Q7Z494 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 CTBP2P3-201ENST00000585629 1255 ntBASIC22.64■■□□□ 1.22
NPHP3Q7Z494 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.64■■□□□ 1.22
NPHP3Q7Z494 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
NPHP3Q7Z494 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 RPF1-202ENST00000370656 724 ntTSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 TPRX2P-201ENST00000535362 881 ntBASIC22.63■■□□□ 1.21
NPHP3Q7Z494 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 AC133552.6-201ENST00000613406 534 ntBASIC22.63■■□□□ 1.21
NPHP3Q7Z494 5S_rRNA.22-201ENST00000614916 106 ntBASIC22.63■■□□□ 1.21
NPHP3Q7Z494 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC22.63■■□□□ 1.21
NPHP3Q7Z494 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms