Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 GPALPP1-207ENST00000611650 899 ntBASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 AC078925.2-201ENST00000624013 1973 ntBASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTCHD3Q3KNS1 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 TUBB8P12-201ENST00000308911 1335 ntBASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 TUBB7P-202ENST00000428444 1305 ntBASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 TUBB8P7-204ENST00000567960 1332 ntBASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 MED15P5-201ENST00000423150 992 ntBASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 AC092865.5-201ENST00000545435 363 ntBASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 AC027601.4-201ENST00000611259 610 ntBASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 AC006538.3-201ENST00000612495 578 ntBASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PTCHD3Q3KNS1 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 KRT18P13-201ENST00000400056 1290 ntBASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 KRT18P27-201ENST00000427733 1299 ntBASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
PTCHD3Q3KNS1 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTCHD3Q3KNS1 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms