Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 AC236430.1-201ENST00000402231 743 ntBASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 COX20P2-201ENST00000452636 358 ntBASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.61■□□□□ 0.73
SHROOM1Q2M3G4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 BAD-207ENST00000544785 525 ntTSL 3 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 AJ011932.1-201ENST00000621707 465 ntBASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.6■□□□□ 0.73
SHROOM1Q2M3G4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 AL021920.2-201ENST00000624828 1351 ntBASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 INGX-202ENST00000489074 768 ntBASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 AC097493.3-201ENST00000509725 367 ntBASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 AC140878.1-201ENST00000565277 250 ntBASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 RN7SL204P-201ENST00000582831 262 ntBASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHROOM1Q2M3G4 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.73
SHROOM1Q2M3G4 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
SHROOM1Q2M3G4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC19.58■□□□□ 0.73
SHROOM1Q2M3G4 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC19.58■□□□□ 0.73
SHROOM1Q2M3G4 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.58■□□□□ 0.73
SHROOM1Q2M3G4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 AP001350.2-201ENST00000625104 1094 ntBASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.58■□□□□ 0.72
SHROOM1Q2M3G4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms