Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SOX4Q06945 AL645939.2-201ENST00000427340 991 ntBASIC17.98■□□□□ 0.47
SOX4Q06945 GPS2P2-201ENST00000430745 888 ntBASIC17.98■□□□□ 0.47
SOX4Q06945 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.98■□□□□ 0.47
SOX4Q06945 CYMP-203ENST00000474680 1263 ntBASIC17.98■□□□□ 0.47
SOX4Q06945 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.98■□□□□ 0.47
SOX4Q06945 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.98■□□□□ 0.47
SOX4Q06945 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX4Q06945 LINC00628-201ENST00000628516 1289 ntBASIC17.98■□□□□ 0.47
SOX4Q06945 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.98■□□□□ 0.47
SOX4Q06945 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
SOX4Q06945 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.98■□□□□ 0.47
SOX4Q06945 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.98■□□□□ 0.47
SOX4Q06945 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SOX4Q06945 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX4Q06945 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX4Q06945 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SOX4Q06945 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SOX4Q06945 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SOX4Q06945 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SOX4Q06945 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.98■□□□□ 0.47
SOX4Q06945 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.98■□□□□ 0.47
SOX4Q06945 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.98■□□□□ 0.47
SOX4Q06945 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
SOX4Q06945 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.98■□□□□ 0.47
SOX4Q06945 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.98■□□□□ 0.47
SOX4Q06945 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX4Q06945 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.97■□□□□ 0.47
SOX4Q06945 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SOX4Q06945 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX4Q06945 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
SOX4Q06945 AC012313.1-201ENST00000593393 3059 ntBASIC17.97■□□□□ 0.47
SOX4Q06945 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SOX4Q06945 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX4Q06945 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.97■□□□□ 0.47
SOX4Q06945 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.97■□□□□ 0.47
SOX4Q06945 AL138918.1-201ENST00000568306 659 ntBASIC17.97■□□□□ 0.47
SOX4Q06945 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.97■□□□□ 0.47
SOX4Q06945 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.97■□□□□ 0.47
SOX4Q06945 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.97■□□□□ 0.47
SOX4Q06945 AC106028.4-201ENST00000614509 607 ntBASIC17.97■□□□□ 0.47
SOX4Q06945 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.97■□□□□ 0.47
SOX4Q06945 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SOX4Q06945 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SOX4Q06945 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SOX4Q06945 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SOX4Q06945 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.97■□□□□ 0.47
SOX4Q06945 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SOX4Q06945 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
SOX4Q06945 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
SOX4Q06945 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.96■□□□□ 0.47
SOX4Q06945 KRT18P32-201ENST00000424695 1287 ntBASIC17.96■□□□□ 0.47
SOX4Q06945 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.96■□□□□ 0.47
SOX4Q06945 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SOX4Q06945 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
SOX4Q06945 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.96■□□□□ 0.47
SOX4Q06945 AC004449.1-201ENST00000564240 433 ntBASIC17.96■□□□□ 0.47
SOX4Q06945 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.96■□□□□ 0.47
SOX4Q06945 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC17.96■□□□□ 0.47
SOX4Q06945 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.96■□□□□ 0.47
SOX4Q06945 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SOX4Q06945 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.96■□□□□ 0.47
SOX4Q06945 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.96■□□□□ 0.47
SOX4Q06945 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.96■□□□□ 0.47
SOX4Q06945 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SOX4Q06945 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SOX4Q06945 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SOX4Q06945 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
SOX4Q06945 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SOX4Q06945 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX4Q06945 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SOX4Q06945 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.95■□□□□ 0.46
SOX4Q06945 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SOX4Q06945 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SOX4Q06945 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
SOX4Q06945 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX4Q06945 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.95■□□□□ 0.46
SOX4Q06945 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SOX4Q06945 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.95■□□□□ 0.46
SOX4Q06945 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.95■□□□□ 0.46
SOX4Q06945 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SOX4Q06945 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.95■□□□□ 0.46
SOX4Q06945 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.95■□□□□ 0.46
SOX4Q06945 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.95■□□□□ 0.46
SOX4Q06945 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SOX4Q06945 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.95■□□□□ 0.46
SOX4Q06945 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms