Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 TPO-206ENST00000382269 1155 ntTSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC10.28□□□□□ -0.76
HSPG2P98160 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC10.28□□□□□ -0.76
HSPG2P98160 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC10.28□□□□□ -0.76
HSPG2P98160 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 AC116562.4-201ENST00000641316 2276 ntBASIC10.28□□□□□ -0.76
HSPG2P98160 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
HSPG2P98160 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 GZMB-202ENST00000382540 816 ntTSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC10.28□□□□□ -0.76
HSPG2P98160 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 APRT-204ENST00000563655 709 ntTSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC10.28□□□□□ -0.76
HSPG2P98160 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC10.28□□□□□ -0.76
HSPG2P98160 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC10.28□□□□□ -0.76
HSPG2P98160 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC10.28□□□□□ -0.76
HSPG2P98160 CDK2AP2P3-201ENST00000422476 372 ntBASIC10.28□□□□□ -0.76
HSPG2P98160 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC10.28□□□□□ -0.76
HSPG2P98160 AC004461.2-201ENST00000629517 803 ntBASIC10.28□□□□□ -0.76
HSPG2P98160 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC10.28□□□□□ -0.76
HSPG2P98160 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC10.27□□□□□ -0.76
HSPG2P98160 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC10.27□□□□□ -0.76
HSPG2P98160 EGFEM1P-202ENST00000431685 1563 ntBASIC10.27□□□□□ -0.76
HSPG2P98160 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
HSPG2P98160 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
HSPG2P98160 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
HSPG2P98160 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
HSPG2P98160 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC10.27□□□□□ -0.76
HSPG2P98160 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC10.27□□□□□ -0.76
HSPG2P98160 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC10.27□□□□□ -0.76
HSPG2P98160 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC10.27□□□□□ -0.76
HSPG2P98160 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC10.27□□□□□ -0.76
HSPG2P98160 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC10.27□□□□□ -0.76
HSPG2P98160 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
HSPG2P98160 AL158212.4-201ENST00000624062 1286 ntBASIC10.27□□□□□ -0.76
HSPG2P98160 ABBA01031663.1-201ENST00000635630 790 ntBASIC10.27□□□□□ -0.76
HSPG2P98160 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC10.27□□□□□ -0.76
HSPG2P98160 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC10.27□□□□□ -0.77
HSPG2P98160 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC10.27□□□□□ -0.77
HSPG2P98160 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC10.27□□□□□ -0.77
HSPG2P98160 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC10.27□□□□□ -0.77
HSPG2P98160 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC10.27□□□□□ -0.77
HSPG2P98160 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC10.27□□□□□ -0.77
HSPG2P98160 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC10.27□□□□□ -0.77
HSPG2P98160 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC10.27□□□□□ -0.77
HSPG2P98160 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC10.27□□□□□ -0.77
HSPG2P98160 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC10.27□□□□□ -0.77
HSPG2P98160 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC10.27□□□□□ -0.77
HSPG2P98160 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC10.27□□□□□ -0.77
HSPG2P98160 NUS1P3-201ENST00000423502 862 ntBASIC10.27□□□□□ -0.77
HSPG2P98160 WDR53-204ENST00000433160 887 ntTSL 5 BASIC10.27□□□□□ -0.77
HSPG2P98160 AC098859.1-201ENST00000502915 1238 ntBASIC10.27□□□□□ -0.77
HSPG2P98160 MPDU1-223ENST00000582151 728 ntBASIC10.27□□□□□ -0.77
HSPG2P98160 MIR7845-201ENST00000618396 99 ntBASIC10.27□□□□□ -0.77
HSPG2P98160 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC10.27□□□□□ -0.77
HSPG2P98160 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
HSPG2P98160 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms