Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIM2P55344 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.06■□□□□ 0.16
LIM2P55344 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIM2P55344 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIM2P55344 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.06■□□□□ 0.16
LIM2P55344 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
LIM2P55344 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.06■□□□□ 0.16
LIM2P55344 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.06■□□□□ 0.16
LIM2P55344 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIM2P55344 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIM2P55344 Z83851.2-201ENST00000609564 659 ntBASIC16.06■□□□□ 0.16
LIM2P55344 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
LIM2P55344 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
LIM2P55344 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LIM2P55344 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIM2P55344 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
LIM2P55344 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
LIM2P55344 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
LIM2P55344 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
LIM2P55344 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
LIM2P55344 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.06■□□□□ 0.16
LIM2P55344 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 AC104109.2-201ENST00000602919 1418 ntBASIC16.05■□□□□ 0.16
LIM2P55344 KRT8P49-201ENST00000604166 1432 ntBASIC16.05■□□□□ 0.16
LIM2P55344 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
LIM2P55344 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 RPL13AP23-201ENST00000480739 586 ntBASIC16.05■□□□□ 0.16
LIM2P55344 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.05■□□□□ 0.16
LIM2P55344 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.05■□□□□ 0.16
LIM2P55344 AC145285.3-201ENST00000564603 959 ntBASIC16.05■□□□□ 0.16
LIM2P55344 OR7E47P-204ENST00000575924 449 ntBASIC16.05■□□□□ 0.16
LIM2P55344 MIR4751-201ENST00000578027 74 ntBASIC16.05■□□□□ 0.16
LIM2P55344 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 AC120114.3-201ENST00000611923 658 ntBASIC16.05■□□□□ 0.16
LIM2P55344 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.05■□□□□ 0.16
LIM2P55344 REXO1L3P-201ENST00000622202 1288 ntBASIC16.05■□□□□ 0.16
LIM2P55344 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LIM2P55344 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 PCDHB17P-201ENST00000539533 2393 ntBASIC16.05■□□□□ 0.16
LIM2P55344 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LIM2P55344 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.05■□□□□ 0.16
LIM2P55344 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LIM2P55344 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.04■□□□□ 0.16
LIM2P55344 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.04■□□□□ 0.16
LIM2P55344 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
LIM2P55344 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.04■□□□□ 0.16
LIM2P55344 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.04■□□□□ 0.16
LIM2P55344 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.04■□□□□ 0.16
LIM2P55344 PRSS29P-201ENST00000440800 595 ntBASIC16.04■□□□□ 0.16
LIM2P55344 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.04■□□□□ 0.16
LIM2P55344 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.04■□□□□ 0.16
LIM2P55344 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.04■□□□□ 0.16
LIM2P55344 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.04■□□□□ 0.16
LIM2P55344 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.04■□□□□ 0.16
LIM2P55344 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 AC010654.1-201ENST00000615722 808 ntBASIC16.04■□□□□ 0.16
LIM2P55344 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LIM2P55344 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.04■□□□□ 0.16
LIM2P55344 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms