Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMK1P53667 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMK1P53667 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 SPTLC1P1-201ENST00000447199 261 ntBASIC16.67■□□□□ 0.26
LIMK1P53667 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.67■□□□□ 0.26
LIMK1P53667 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMK1P53667 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMK1P53667 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMK1P53667 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
LIMK1P53667 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.67■□□□□ 0.26
LIMK1P53667 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
LIMK1P53667 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
LIMK1P53667 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
LIMK1P53667 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
LIMK1P53667 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
LIMK1P53667 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.66■□□□□ 0.26
LIMK1P53667 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LIMK1P53667 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
LIMK1P53667 AC106820.2-201ENST00000563775 3264 ntBASIC16.66■□□□□ 0.26
LIMK1P53667 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIMK1P53667 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
LIMK1P53667 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
LIMK1P53667 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
LIMK1P53667 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 ALG1L8P-201ENST00000533887 760 ntBASIC16.66■□□□□ 0.26
LIMK1P53667 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.66■□□□□ 0.26
LIMK1P53667 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.66■□□□□ 0.26
LIMK1P53667 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.66■□□□□ 0.26
LIMK1P53667 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.66■□□□□ 0.26
LIMK1P53667 AL590560.3-201ENST00000623350 461 ntBASIC16.66■□□□□ 0.26
LIMK1P53667 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
LIMK1P53667 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.66■□□□□ 0.26
LIMK1P53667 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LIMK1P53667 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.66■□□□□ 0.26
LIMK1P53667 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIMK1P53667 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIMK1P53667 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMK1P53667 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMK1P53667 AC022144.1-201ENST00000602255 1580 ntBASIC16.65■□□□□ 0.26
LIMK1P53667 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMK1P53667 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIMK1P53667 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 AD000864.1-201ENST00000624076 2295 ntBASIC16.65■□□□□ 0.26
LIMK1P53667 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
LIMK1P53667 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
LIMK1P53667 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 TSSK5P-201ENST00000423978 907 ntBASIC16.65■□□□□ 0.26
LIMK1P53667 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.65■□□□□ 0.26
LIMK1P53667 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.65■□□□□ 0.26
LIMK1P53667 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LIMK1P53667 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.65■□□□□ 0.26
LIMK1P53667 AC073592.8-201ENST00000624126 511 ntBASIC16.65■□□□□ 0.26
LIMK1P53667 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMK1P53667 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LIMK1P53667 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LIMK1P53667 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
LIMK1P53667 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.65■□□□□ 0.26
LIMK1P53667 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
LIMK1P53667 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms