Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.45■□□□□ 0.22
HNF4AP41235 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.45■□□□□ 0.22
HNF4AP41235 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
HNF4AP41235 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.45■□□□□ 0.22
HNF4AP41235 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HNF4AP41235 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
HNF4AP41235 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
HNF4AP41235 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HNF4AP41235 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.45■□□□□ 0.22
HNF4AP41235 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
HNF4AP41235 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
HNF4AP41235 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.44■□□□□ 0.22
HNF4AP41235 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.44■□□□□ 0.22
HNF4AP41235 AC243591.1-201ENST00000452967 1364 ntBASIC16.44■□□□□ 0.22
HNF4AP41235 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.44■□□□□ 0.22
HNF4AP41235 OR7E14P-202ENST00000530490 1290 ntBASIC16.44■□□□□ 0.22
HNF4AP41235 AP002469.2-201ENST00000531724 424 ntBASIC16.44■□□□□ 0.22
HNF4AP41235 AL160237.2-201ENST00000556165 472 ntBASIC16.44■□□□□ 0.22
HNF4AP41235 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.44■□□□□ 0.22
HNF4AP41235 TERC-201ENST00000602385 541 ntBASIC16.44■□□□□ 0.22
HNF4AP41235 AC104692.2-201ENST00000603054 253 ntBASIC16.44■□□□□ 0.22
HNF4AP41235 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.44■□□□□ 0.22
HNF4AP41235 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.44■□□□□ 0.22
HNF4AP41235 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HNF4AP41235 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HNF4AP41235 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.44■□□□□ 0.22
HNF4AP41235 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HNF4AP41235 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HNF4AP41235 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.43■□□□□ 0.22
HNF4AP41235 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.43■□□□□ 0.22
HNF4AP41235 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.43■□□□□ 0.22
HNF4AP41235 HNRNPDP1-201ENST00000439535 754 ntBASIC16.43■□□□□ 0.22
HNF4AP41235 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
HNF4AP41235 DUX4L17-201ENST00000557360 1267 ntBASIC16.43■□□□□ 0.22
HNF4AP41235 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.43■□□□□ 0.22
HNF4AP41235 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HNF4AP41235 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.43■□□□□ 0.22
HNF4AP41235 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HNF4AP41235 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HNF4AP41235 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
HNF4AP41235 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms