Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
BRCA1P38398 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCA1P38398 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
BRCA1P38398 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.21■□□□□ 0.83
BRCA1P38398 AC093525.8-201ENST00000624099 1342 ntBASIC20.21■□□□□ 0.83
BRCA1P38398 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
BRCA1P38398 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.21■□□□□ 0.83
BRCA1P38398 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
BRCA1P38398 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
BRCA1P38398 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCA1P38398 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC20.2■□□□□ 0.82
BRCA1P38398 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC20.2■□□□□ 0.82
BRCA1P38398 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC20.2■□□□□ 0.82
BRCA1P38398 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCA1P38398 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.2■□□□□ 0.82
BRCA1P38398 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC20.2■□□□□ 0.82
BRCA1P38398 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 CDC14C-201ENST00000428251 1719 ntBASIC20.2■□□□□ 0.82
BRCA1P38398 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC20.2■□□□□ 0.82
BRCA1P38398 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
BRCA1P38398 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC20.2■□□□□ 0.82
BRCA1P38398 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCA1P38398 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
BRCA1P38398 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC20.2■□□□□ 0.82
BRCA1P38398 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCA1P38398 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC20.2■□□□□ 0.82
BRCA1P38398 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.2■□□□□ 0.82
BRCA1P38398 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
BRCA1P38398 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 AL355312.1-201ENST00000407115 2176 ntBASIC20.19■□□□□ 0.82
BRCA1P38398 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
BRCA1P38398 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
BRCA1P38398 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.19■□□□□ 0.82
BRCA1P38398 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.19■□□□□ 0.82
BRCA1P38398 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.19■□□□□ 0.82
BRCA1P38398 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
BRCA1P38398 AC005229.1-201ENST00000392885 409 ntBASIC20.19■□□□□ 0.82
BRCA1P38398 AC092506.1-202ENST00000401022 528 ntBASIC20.19■□□□□ 0.82
BRCA1P38398 KRT43P-201ENST00000434019 910 ntBASIC20.19■□□□□ 0.82
BRCA1P38398 SDHAP3-202ENST00000515467 728 ntBASIC20.19■□□□□ 0.82
BRCA1P38398 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC20.19■□□□□ 0.82
BRCA1P38398 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
BRCA1P38398 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC20.19■□□□□ 0.82
BRCA1P38398 RPS15-212ENST00000593052 629 ntTSL 2 BASIC20.19■□□□□ 0.82
BRCA1P38398 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.19■□□□□ 0.82
BRCA1P38398 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC20.19■□□□□ 0.82
BRCA1P38398 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC20.19■□□□□ 0.82
BRCA1P38398 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
BRCA1P38398 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
BRCA1P38398 PC-204ENST00000524491 1714 ntTSL 2 BASIC20.18■□□□□ 0.82
BRCA1P38398 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.18■□□□□ 0.82
BRCA1P38398 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.18■□□□□ 0.82
BRCA1P38398 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
BRCA1P38398 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC20.18■□□□□ 0.82
BRCA1P38398 AC025048.3-201ENST00000590609 569 ntBASIC20.18■□□□□ 0.82
BRCA1P38398 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 AC005702.4-201ENST00000618393 416 ntBASIC20.18■□□□□ 0.82
BRCA1P38398 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
BRCA1P38398 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
BRCA1P38398 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
BRCA1P38398 AC133963.1-201ENST00000504166 1679 ntBASIC20.18■□□□□ 0.82
BRCA1P38398 AC116353.5-201ENST00000638148 1699 ntBASIC20.18■□□□□ 0.82
BRCA1P38398 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.18■□□□□ 0.82
BRCA1P38398 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
BRCA1P38398 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.18■□□□□ 0.82
BRCA1P38398 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC20.18■□□□□ 0.82
BRCA1P38398 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
BRCA1P38398 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC20.18■□□□□ 0.82
BRCA1P38398 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.18■□□□□ 0.82
BRCA1P38398 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC20.18■□□□□ 0.82
BRCA1P38398 AC074044.1-201ENST00000609673 707 ntBASIC20.18■□□□□ 0.82
BRCA1P38398 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.17■□□□□ 0.82
BRCA1P38398 AC093525.9-201ENST00000624961 1746 ntBASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms