Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
VIMP08670 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.06■□□□□ 0.32
VIMP08670 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 TSPY12P-201ENST00000421279 868 ntBASIC17.06■□□□□ 0.32
VIMP08670 AC007663.1-201ENST00000438948 1240 ntBASIC17.06■□□□□ 0.32
VIMP08670 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.06■□□□□ 0.32
VIMP08670 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.06■□□□□ 0.32
VIMP08670 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 AC099063.4-201ENST00000641099 1602 ntBASIC17.06■□□□□ 0.32
VIMP08670 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VIMP08670 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 ME2P1-201ENST00000426028 1970 ntBASIC17.06■□□□□ 0.32
VIMP08670 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VIMP08670 FRMD8P1-201ENST00000440433 1524 ntBASIC17.06■□□□□ 0.32
VIMP08670 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.05■□□□□ 0.32
VIMP08670 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.05■□□□□ 0.32
VIMP08670 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.05■□□□□ 0.32
VIMP08670 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VIMP08670 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.05■□□□□ 0.32
VIMP08670 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.05■□□□□ 0.32
VIMP08670 ITM2C-210ENST00000620962 501 ntBASIC17.05■□□□□ 0.32
VIMP08670 AC116562.4-202ENST00000641738 218 ntBASIC17.05■□□□□ 0.32
VIMP08670 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VIMP08670 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VIMP08670 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VIMP08670 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.04■□□□□ 0.32
VIMP08670 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.04■□□□□ 0.32
VIMP08670 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.04■□□□□ 0.32
VIMP08670 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.04■□□□□ 0.32
VIMP08670 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VIMP08670 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms