Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS4BO75351 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS4BO75351 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS4BO75351 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS4BO75351 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VPS4BO75351 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
VPS4BO75351 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS4BO75351 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
VPS4BO75351 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4BO75351 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS4BO75351 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 AC003669.1-201ENST00000334569 611 ntBASIC16.63■□□□□ 0.25
VPS4BO75351 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4BO75351 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS4BO75351 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
VPS4BO75351 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS4BO75351 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.63■□□□□ 0.25
VPS4BO75351 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4BO75351 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS4BO75351 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS4BO75351 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
VPS4BO75351 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS4BO75351 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4BO75351 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4BO75351 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
VPS4BO75351 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS4BO75351 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
VPS4BO75351 TUBB8P12-201ENST00000308911 1335 ntBASIC16.63■□□□□ 0.25
VPS4BO75351 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 TUBB7P-202ENST00000428444 1305 ntBASIC16.63■□□□□ 0.25
VPS4BO75351 TUBB8P7-204ENST00000567960 1332 ntBASIC16.63■□□□□ 0.25
VPS4BO75351 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
VPS4BO75351 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS4BO75351 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
VPS4BO75351 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS4BO75351 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.62■□□□□ 0.25
VPS4BO75351 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.62■□□□□ 0.25
VPS4BO75351 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS4BO75351 AC008608.2-201ENST00000606089 416 ntBASIC16.62■□□□□ 0.25
VPS4BO75351 AL139424.1-201ENST00000607572 797 ntBASIC16.62■□□□□ 0.25
VPS4BO75351 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 AC243591.1-201ENST00000452967 1364 ntBASIC16.62■□□□□ 0.25
VPS4BO75351 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
VPS4BO75351 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS4BO75351 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS4BO75351 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS4BO75351 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS4BO75351 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4BO75351 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
VPS4BO75351 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms