Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC39Q9UFE4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 AC079328.2-201ENST00000561241 3354 ntBASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 AC096582.2-201ENST00000510860 516 ntBASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 AC092329.2-201ENST00000598402 547 ntBASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 AL353593.2-201ENST00000602529 1483 ntBASIC19.67■□□□□ 0.74
CCDC39Q9UFE4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AC092171.3-201ENST00000610122 2651 ntBASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 POM121L3P-201ENST00000419331 1163 ntBASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AC012615.1-201ENST00000565797 1299 ntBASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 STK25P1-201ENST00000585406 838 ntBASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 BNIP3P18-201ENST00000593976 575 ntBASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AC046185.3-201ENST00000623228 1824 ntBASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 RNF216P1-203ENST00000404404 2427 ntBASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 AC078925.2-201ENST00000624013 1973 ntBASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC39Q9UFE4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms