Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC002310.6-201ENST00000624451 1377 ntBASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 AC092053.1-201ENST00000605787 1936 ntBASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD1Q96NR3 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 AC129492.6-201ENST00000611383 1305 ntBASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 PRORSD1P-202ENST00000563365 2154 ntBASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 AD000864.1-201ENST00000624076 2295 ntBASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD1Q96NR3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 IGLL3P-201ENST00000412472 434 ntBASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 CXCL1P1-201ENST00000502804 216 ntBASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 AC018845.2-201ENST00000568326 409 ntBASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD1Q96NR3 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD1Q96NR3 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD1Q96NR3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD1Q96NR3 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
PTCHD1Q96NR3 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 AC124947.2-201ENST00000547118 1133 ntBASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 AC096734.2-201ENST00000562054 433 ntBASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PTCHD1Q96NR3 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms