Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 AC004790.2-201ENST00000623588 572 ntBASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 PCDHB19P-201ENST00000570871 2371 ntBASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 AC010507.1-201ENST00000633895 436 ntBASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 PCDHA14-201ENST00000506751 2298 ntBASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 AC004967.1-201ENST00000453589 447 ntBASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 HLA-J-203ENST00000494367 1087 ntBASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 FAM215A-202ENST00000632077 792 ntBASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SHROOM3Q8TF72 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 RPS2P28-201ENST00000314255 741 ntBASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 AC004832.2-201ENST00000426397 482 ntBASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 IGHV3-65-201ENST00000523210 341 ntBASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 AC134684.3-201ENST00000641758 218 ntBASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SHROOM3Q8TF72 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.34
SHROOM3Q8TF72 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.21■□□□□ 0.34
SHROOM3Q8TF72 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SHROOM3Q8TF72 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHROOM3Q8TF72 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.2■□□□□ 0.34
SHROOM3Q8TF72 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SHROOM3Q8TF72 AP002490.2-201ENST00000524791 560 ntBASIC17.2■□□□□ 0.34
SHROOM3Q8TF72 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.2■□□□□ 0.34
SHROOM3Q8TF72 OR7E47P-204ENST00000575924 449 ntBASIC17.2■□□□□ 0.34
SHROOM3Q8TF72 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms