Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.96■□□□□ 0.79
NKX2-3Q8TAU0 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.79
NKX2-3Q8TAU0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 AC009053.2-201ENST00000563701 2365 ntBASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 AL121761.2-201ENST00000598007 1648 ntBASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 AC015922.1-201ENST00000421102 1152 ntBASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 FAM58CP-201ENST00000435741 640 ntBASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.95■□□□□ 0.78
NKX2-3Q8TAU0 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 KRT8P49-201ENST00000604166 1432 ntBASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 PMS2P4-201ENST00000412466 1052 ntBASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 FAM86GP-201ENST00000448322 971 ntBASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 AL513210.1-201ENST00000629608 234 ntBASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 BCAR1-209ENST00000546196 1340 ntBASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 TOP3BP1-201ENST00000420768 1380 ntBASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.94■□□□□ 0.78
NKX2-3Q8TAU0 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 UBALD1-205ENST00000590891 2641 ntBASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 HMGA1P7-201ENST00000406908 502 ntBASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
NKX2-3Q8TAU0 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.92■□□□□ 0.78
NKX2-3Q8TAU0 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
NKX2-3Q8TAU0 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
NKX2-3Q8TAU0 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms