Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 AC004835.2-201ENST00000603762 682 ntBASIC18.39■□□□□ 0.53
VPS52Q8N1B4 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.39■□□□□ 0.53
VPS52Q8N1B4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 AL139400.1-201ENST00000366220 510 ntBASIC18.38■□□□□ 0.53
VPS52Q8N1B4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 MIR770-201ENST00000390219 98 ntBASIC18.38■□□□□ 0.53
VPS52Q8N1B4 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 AL513480.1-201ENST00000451731 511 ntBASIC18.38■□□□□ 0.53
VPS52Q8N1B4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 AL513210.1-201ENST00000629608 234 ntBASIC18.38■□□□□ 0.53
VPS52Q8N1B4 AC105339.1-204ENST00000636249 355 ntBASIC18.38■□□□□ 0.53
VPS52Q8N1B4 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VPS52Q8N1B4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 AC004461.1-201ENST00000412461 403 ntBASIC18.37■□□□□ 0.53
VPS52Q8N1B4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 AC092919.2-201ENST00000623631 1645 ntBASIC18.37■□□□□ 0.53
VPS52Q8N1B4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS52Q8N1B4 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS52Q8N1B4 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms