Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 LINC02084-201ENST00000606069 1096 ntBASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 AC004877.2-201ENST00000623941 599 ntBASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 AC010507.1-201ENST00000633895 436 ntBASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 ELL2P1-201ENST00000413990 1906 ntBASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC144BQ3MJ40 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 CNN2P11-201ENST00000429351 262 ntBASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 OR7E47P-204ENST00000575924 449 ntBASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 AL353135.1-201ENST00000606729 504 ntBASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CCDC144BQ3MJ40 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 AP002414.1-201ENST00000391405 1147 ntBASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 LINC00982-205ENST00000420957 435 ntBASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 CEND1P1-201ENST00000451006 455 ntBASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 AC096734.2-201ENST00000562054 433 ntBASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 PDPK2P-202ENST00000562415 1191 ntBASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC144BQ3MJ40 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms