Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.16■□□□□ 0.02
CLRN1P58418 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CLRN1P58418 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLRN1P58418 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CLRN1P58418 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC15.16■□□□□ 0.02
CLRN1P58418 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
CLRN1P58418 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CLRN1P58418 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
CLRN1P58418 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.16■□□□□ 0.02
CLRN1P58418 AC021087.4-201ENST00000563761 564 ntBASIC15.16■□□□□ 0.02
CLRN1P58418 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
CLRN1P58418 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.16■□□□□ 0.02
CLRN1P58418 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.16■□□□□ 0.02
CLRN1P58418 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CLRN1P58418 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
CLRN1P58418 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.16■□□□□ 0.02
CLRN1P58418 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CLRN1P58418 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CLRN1P58418 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.15■□□□□ 0.02
CLRN1P58418 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN1P58418 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN1P58418 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.15■□□□□ 0.02
CLRN1P58418 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 AP002414.1-201ENST00000391405 1147 ntBASIC15.15■□□□□ 0.02
CLRN1P58418 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.15■□□□□ 0.02
CLRN1P58418 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CLRN1P58418 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CLRN1P58418 UNC93B7-201ENST00000509439 705 ntBASIC15.15■□□□□ 0.02
CLRN1P58418 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC15.15■□□□□ 0.02
CLRN1P58418 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.15■□□□□ 0.02
CLRN1P58418 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CLRN1P58418 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN1P58418 AC006557.2-201ENST00000592985 1240 ntBASIC15.15■□□□□ 0.02
CLRN1P58418 AC025062.2-201ENST00000605477 670 ntBASIC15.15■□□□□ 0.02
CLRN1P58418 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.15■□□□□ 0.02
CLRN1P58418 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN1P58418 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CLRN1P58418 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN1P58418 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CLRN1P58418 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CLRN1P58418 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC15.15■□□□□ 0.02
CLRN1P58418 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CLRN1P58418 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN1P58418 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.14■□□□□ 0.01
CLRN1P58418 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.14■□□□□ 0.01
CLRN1P58418 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.14■□□□□ 0.01
CLRN1P58418 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN1P58418 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN1P58418 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN1P58418 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN1P58418 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.14■□□□□ 0.01
CLRN1P58418 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.14■□□□□ 0.01
CLRN1P58418 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN1P58418 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CLRN1P58418 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CLRN1P58418 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms