Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 BCRP1-201ENST00000444246 691 ntBASIC16.46■□□□□ 0.23
PDX1P52945 AC087163.2-201ENST00000457299 853 ntBASIC16.46■□□□□ 0.23
PDX1P52945 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.46■□□□□ 0.23
PDX1P52945 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.46■□□□□ 0.23
PDX1P52945 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.46■□□□□ 0.23
PDX1P52945 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.46■□□□□ 0.23
PDX1P52945 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.46■□□□□ 0.23
PDX1P52945 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
PDX1P52945 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDX1P52945 AC106820.2-201ENST00000563775 3264 ntBASIC16.46■□□□□ 0.22
PDX1P52945 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.46■□□□□ 0.22
PDX1P52945 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PDX1P52945 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
PDX1P52945 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.45■□□□□ 0.22
PDX1P52945 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.45■□□□□ 0.22
PDX1P52945 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
PDX1P52945 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 AL513480.1-201ENST00000451731 511 ntBASIC16.45■□□□□ 0.22
PDX1P52945 AC093520.2-201ENST00000561830 333 ntBASIC16.45■□□□□ 0.22
PDX1P52945 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.45■□□□□ 0.22
PDX1P52945 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
PDX1P52945 AC099522.2-201ENST00000607001 744 ntBASIC16.45■□□□□ 0.22
PDX1P52945 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.45■□□□□ 0.22
PDX1P52945 LINC01451-201ENST00000623792 534 ntBASIC16.45■□□□□ 0.22
PDX1P52945 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.45■□□□□ 0.22
PDX1P52945 AL138688.1-201ENST00000624851 1594 ntBASIC16.45■□□□□ 0.22
PDX1P52945 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.45■□□□□ 0.22
PDX1P52945 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PDX1P52945 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
PDX1P52945 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.45■□□□□ 0.22
PDX1P52945 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PDX1P52945 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.44■□□□□ 0.22
PDX1P52945 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 AL035633.1-201ENST00000406139 838 ntBASIC16.44■□□□□ 0.22
PDX1P52945 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.44■□□□□ 0.22
PDX1P52945 AC112191.1-201ENST00000523689 701 ntBASIC16.44■□□□□ 0.22
PDX1P52945 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.44■□□□□ 0.22
PDX1P52945 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.44■□□□□ 0.22
PDX1P52945 AC004449.1-201ENST00000564240 433 ntBASIC16.44■□□□□ 0.22
PDX1P52945 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.44■□□□□ 0.22
PDX1P52945 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.44■□□□□ 0.22
PDX1P52945 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PDX1P52945 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.44■□□□□ 0.22
PDX1P52945 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.43■□□□□ 0.22
PDX1P52945 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
PDX1P52945 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PDX1P52945 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PDX1P52945 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PDX1P52945 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PDX1P52945 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PDX1P52945 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PDX1P52945 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PDX1P52945 AL355306.1-201ENST00000415580 579 ntBASIC16.43■□□□□ 0.22
PDX1P52945 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.43■□□□□ 0.22
PDX1P52945 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms