Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MIR3687-2-201ENST00000577708 61 ntBASIC19.01■□□□□ 0.63
CIITAP33076 AL078644.1-201ENST00000609881 752 ntBASIC19.01■□□□□ 0.63
CIITAP33076 MIR3687-1-201ENST00000614492 61 ntBASIC19.01■□□□□ 0.63
CIITAP33076 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.01■□□□□ 0.63
CIITAP33076 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.01■□□□□ 0.63
CIITAP33076 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.01■□□□□ 0.63
CIITAP33076 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CIITAP33076 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.01■□□□□ 0.63
CIITAP33076 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CIITAP33076 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
CIITAP33076 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CIITAP33076 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19■□□□□ 0.63
CIITAP33076 SLC9A3P2-201ENST00000447821 2021 ntBASIC19■□□□□ 0.63
CIITAP33076 AC005915.1-201ENST00000624912 2018 ntBASIC19■□□□□ 0.63
CIITAP33076 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CIITAP33076 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 AC002056.1-201ENST00000395613 760 ntBASIC19■□□□□ 0.63
CIITAP33076 PMS2P4-201ENST00000412466 1052 ntBASIC19■□□□□ 0.63
CIITAP33076 ACTG1P14-201ENST00000446382 1122 ntBASIC19■□□□□ 0.63
CIITAP33076 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC19■□□□□ 0.63
CIITAP33076 AC112191.1-201ENST00000523689 701 ntBASIC19■□□□□ 0.63
CIITAP33076 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19■□□□□ 0.63
CIITAP33076 CD7-202ENST00000578509 925 ntTSL 3 BASIC19■□□□□ 0.63
CIITAP33076 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19■□□□□ 0.63
CIITAP33076 AL031055.1-201ENST00000606362 631 ntBASIC19■□□□□ 0.63
CIITAP33076 AC099522.2-201ENST00000607001 744 ntBASIC19■□□□□ 0.63
CIITAP33076 AC006538.3-201ENST00000612495 578 ntBASIC19■□□□□ 0.63
CIITAP33076 AC055717.3-201ENST00000622967 595 ntBASIC19■□□□□ 0.63
CIITAP33076 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19■□□□□ 0.63
CIITAP33076 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CIITAP33076 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19■□□□□ 0.63
CIITAP33076 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CIITAP33076 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CIITAP33076 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CIITAP33076 FZD10-202ENST00000539839 3282 ntBASIC18.99■□□□□ 0.63
CIITAP33076 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.99■□□□□ 0.63
CIITAP33076 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.99■□□□□ 0.63
CIITAP33076 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 ELL2P1-201ENST00000413990 1906 ntBASIC18.99■□□□□ 0.63
CIITAP33076 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CIITAP33076 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CIITAP33076 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CIITAP33076 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.98■□□□□ 0.63
CIITAP33076 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CIITAP33076 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CIITAP33076 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.98■□□□□ 0.63
CIITAP33076 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.98■□□□□ 0.63
CIITAP33076 NEK7-201ENST00000367383 586 ntTSL 2 BASIC18.98■□□□□ 0.63
CIITAP33076 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CIITAP33076 ADH5P3-201ENST00000433842 1137 ntBASIC18.98■□□□□ 0.63
CIITAP33076 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.98■□□□□ 0.63
CIITAP33076 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CIITAP33076 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
CIITAP33076 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.98■□□□□ 0.63
CIITAP33076 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.98■□□□□ 0.63
CIITAP33076 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms