Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.45■□□□□ 0.22
LDLRP01130 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LDLRP01130 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.45■□□□□ 0.22
LDLRP01130 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
LDLRP01130 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.44■□□□□ 0.22
LDLRP01130 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.44■□□□□ 0.22
LDLRP01130 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.44■□□□□ 0.22
LDLRP01130 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
LDLRP01130 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.44■□□□□ 0.22
LDLRP01130 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
LDLRP01130 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 MIR940-201ENST00000401276 94 ntBASIC16.44■□□□□ 0.22
LDLRP01130 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.44■□□□□ 0.22
LDLRP01130 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.44■□□□□ 0.22
LDLRP01130 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.44■□□□□ 0.22
LDLRP01130 AP005901.3-202ENST00000581653 237 ntBASIC16.44■□□□□ 0.22
LDLRP01130 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.44■□□□□ 0.22
LDLRP01130 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
LDLRP01130 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 AC046185.3-201ENST00000623228 1824 ntBASIC16.44■□□□□ 0.22
LDLRP01130 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.44■□□□□ 0.22
LDLRP01130 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.44■□□□□ 0.22
LDLRP01130 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.44■□□□□ 0.22
LDLRP01130 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
LDLRP01130 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LDLRP01130 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.44■□□□□ 0.22
LDLRP01130 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.43■□□□□ 0.22
LDLRP01130 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 LINC02012-201ENST00000608206 1725 ntBASIC16.43■□□□□ 0.22
LDLRP01130 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LDLRP01130 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LDLRP01130 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
LDLRP01130 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.43■□□□□ 0.22
LDLRP01130 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 RPL13AP23-201ENST00000480739 586 ntBASIC16.43■□□□□ 0.22
LDLRP01130 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.43■□□□□ 0.22
LDLRP01130 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.43■□□□□ 0.22
LDLRP01130 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.43■□□□□ 0.22
LDLRP01130 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.43■□□□□ 0.22
LDLRP01130 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 LINC02084-201ENST00000606069 1096 ntBASIC16.43■□□□□ 0.22
LDLRP01130 AL691403.2-201ENST00000618460 490 ntBASIC16.43■□□□□ 0.22
LDLRP01130 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
LDLRP01130 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 PCDHB17P-201ENST00000539533 2393 ntBASIC16.43■□□□□ 0.22
LDLRP01130 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.43■□□□□ 0.22
LDLRP01130 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.43■□□□□ 0.22
LDLRP01130 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LDLRP01130 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.43■□□□□ 0.22
LDLRP01130 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
LDLRP01130 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LDLRP01130 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms