Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TCRBV7S3A2A0A539 AC006538.1-201ENST00000567905 1585 ntBASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 AL139384.1-201ENST00000612143 3047 ntBASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 AC006277.1-201ENST00000624348 1610 ntBASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.23■□□□□ 0.35
TCRBV7S3A2A0A539 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 AL022326.1-202ENST00000641533 845 ntBASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 SNX33P1-201ENST00000592116 1762 ntBASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TCRBV7S3A2A0A539 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TCRBV7S3A2A0A539 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms