Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC092119.3-201ENST00000612618 583 ntBASIC17.74■□□□□ 0.43
PCDHA3Q9Y5H8 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PCDHA3Q9Y5H8 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHA3Q9Y5H8 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHA3Q9Y5H8 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PCDHA3Q9Y5H8 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.74■□□□□ 0.43
PCDHA3Q9Y5H8 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 AC006277.1-201ENST00000624348 1610 ntBASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 AL513523.2-202ENST00000427283 2040 ntBASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 AC132008.2-207ENST00000454517 770 ntBASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 AL139011.1-202ENST00000642063 584 ntBASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 PCDHA1-201ENST00000378133 2726 ntBASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PCDHA3Q9Y5H8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 ME2P1-201ENST00000426028 1970 ntBASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 AC064862.7-201ENST00000604520 867 ntBASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.72■□□□□ 0.43
PCDHA3Q9Y5H8 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 BX005266.1-201ENST00000473402 457 ntBASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 AC106795.1-205ENST00000512851 1056 ntBASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.71■□□□□ 0.43
PCDHA3Q9Y5H8 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms