Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 AC006518.1-201ENST00000541449 943 ntBASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 DUX4L17-201ENST00000557360 1267 ntBASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 USP3-AS1-204ENST00000559861 620 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VPS9D1Q9Y2B5 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.3
VPS9D1Q9Y2B5 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VPS9D1Q9Y2B5 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS9D1Q9Y2B5 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.89■□□□□ 0.3
VPS9D1Q9Y2B5 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS9D1Q9Y2B5 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS9D1Q9Y2B5 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VPS9D1Q9Y2B5 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
VPS9D1Q9Y2B5 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 AC073648.2-201ENST00000510116 352 ntBASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 AF238378.1-201ENST00000526806 358 ntBASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 AC108359.1-201ENST00000616451 1211 ntBASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 AL805961.1-202ENST00000641562 540 ntBASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 AC107918.4-202ENST00000641623 219 ntBASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 PCDHB17P-201ENST00000539533 2393 ntBASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 NFIC-211ENST00000641145 8399 ntBASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS9D1Q9Y2B5 LINC00895-201ENST00000629028 1637 ntBASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 AGGF1P2-201ENST00000426656 2106 ntBASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 PAWRP1-201ENST00000451083 565 ntBASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 AC021087.4-201ENST00000563761 564 ntBASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
VPS9D1Q9Y2B5 AC025062.2-201ENST00000605477 670 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms