Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CHMP4AQ9BY43 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 AC006277.1-201ENST00000624348 1610 ntBASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 RNU1-129P-201ENST00000384064 167 ntBASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 AC092474.2-201ENST00000424288 719 ntBASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 U1.21-201ENST00000580816 167 ntBASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 AC092902.6-201ENST00000641783 218 ntBASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.56■■□□□ 1.04
CHMP4AQ9BY43 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 GATB-205ENST00000508611 605 ntTSL 2 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 SIGLEC29P-201ENST00000599873 1114 ntBASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 AL078644.1-201ENST00000609881 752 ntBASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 AL691403.2-201ENST00000618460 490 ntBASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CHMP4AQ9BY43 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 RN7SL589P-201ENST00000481268 310 ntBASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 ALG1L5P-201ENST00000482043 771 ntBASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 AL031055.1-201ENST00000606362 631 ntBASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 AC134684.3-201ENST00000641758 218 ntBASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC21.54■■□□□ 1.04
CHMP4AQ9BY43 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms