Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.02■□□□□ 0.16
NR1H4Q96RI1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.02■□□□□ 0.16
NR1H4Q96RI1 AC131212.4-201ENST00000623606 975 ntBASIC16.02■□□□□ 0.16
NR1H4Q96RI1 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NR1H4Q96RI1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 AC026748.1-201ENST00000624349 3251 ntBASIC16.01■□□□□ 0.15
NR1H4Q96RI1 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 ISG20-202ENST00000379224 540 ntTSL 3 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 RN7SL471P-201ENST00000580476 299 ntBASIC16.01■□□□□ 0.15
NR1H4Q96RI1 AC073648.6-201ENST00000641589 218 ntBASIC16.01■□□□□ 0.15
NR1H4Q96RI1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 AC023908.3-201ENST00000564211 3047 ntBASIC16.01■□□□□ 0.15
NR1H4Q96RI1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NR1H4Q96RI1 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16■□□□□ 0.15
NR1H4Q96RI1 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16■□□□□ 0.15
NR1H4Q96RI1 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16■□□□□ 0.15
NR1H4Q96RI1 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16■□□□□ 0.15
NR1H4Q96RI1 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
NR1H4Q96RI1 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
NR1H4Q96RI1 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16■□□□□ 0.15
NR1H4Q96RI1 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16■□□□□ 0.15
NR1H4Q96RI1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms