Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00477Q96M19 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 SOD2-201ENST00000337404 991 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 CDV3-207ENST00000508481 661 ntTSL 3 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 FAM86EP-206ENST00000510506 987 ntBASIC12.75□□□□□ -0.37
LINC00477Q96M19 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 CES3-203ENST00000543856 3178 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 AP005901.3-202ENST00000581653 237 ntBASIC12.75□□□□□ -0.37
LINC00477Q96M19 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC12.75□□□□□ -0.37
LINC00477Q96M19 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00477Q96M19 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 NSUN5P1-202ENST00000421140 1535 ntBASIC12.74□□□□□ -0.37
LINC00477Q96M19 NSUN5P2-203ENST00000457352 1529 ntBASIC12.74□□□□□ -0.37
LINC00477Q96M19 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 PPIH-202ENST00000372549 327 ntTSL 3 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 RCN1P2-201ENST00000398357 915 ntBASIC12.74□□□□□ -0.37
LINC00477Q96M19 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 AC096582.2-201ENST00000510860 516 ntBASIC12.74□□□□□ -0.37
LINC00477Q96M19 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 AL049597.2-201ENST00000565575 961 ntBASIC12.74□□□□□ -0.37
LINC00477Q96M19 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 DBP-204ENST00000599385 709 ntTSL 3 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 AC116407.4-201ENST00000623319 1061 ntBASIC12.74□□□□□ -0.37
LINC00477Q96M19 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 AP000867.4-201ENST00000641616 219 ntBASIC12.74□□□□□ -0.37
LINC00477Q96M19 PCDHB17P-201ENST00000539533 2393 ntBASIC12.74□□□□□ -0.37
LINC00477Q96M19 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
LINC00477Q96M19 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
LINC00477Q96M19 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms