Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.25■□□□□ 0.83
CHMP4CQ96CF2 GPR89P-201ENST00000407924 1495 ntBASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 KRT18P2-201ENST00000447938 1258 ntBASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 AC004790.2-201ENST00000623588 572 ntBASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CHMP4CQ96CF2 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 MIR4751-201ENST00000578027 74 ntBASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 PMS2P7-201ENST00000506558 1336 ntBASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 AC080080.1-201ENST00000625121 2420 ntBASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CHMP4CQ96CF2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 ACTG1P4-201ENST00000425123 1122 ntBASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 KRT18P3-201ENST00000451602 1288 ntBASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 AC108073.2-201ENST00000464002 357 ntBASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 RPS15P9-201ENST00000494093 319 ntBASIC20.22■□□□□ 0.83
CHMP4CQ96CF2 AC018845.2-201ENST00000568326 409 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms