Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 PTCHD3P3-201ENST00000403073 906 ntBASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 AL513480.1-201ENST00000451731 511 ntBASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 MIR4751-201ENST00000578027 74 ntBASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.26■□□□□ 0.35
SHROOM3Q8TF72 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 AL035633.1-201ENST00000406139 838 ntBASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SHROOM3Q8TF72 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 MIR4492-201ENST00000581627 80 ntBASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 MIR3197-201ENST00000582241 73 ntBASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 AC009947.1-201ENST00000444350 727 ntBASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.24■□□□□ 0.35
SHROOM3Q8TF72 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 AL662844.4-201ENST00000606367 2838 ntBASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHROOM3Q8TF72 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms