Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 RBPMS2P1-201ENST00000437762 623 ntBASIC16.47■□□□□ 0.23
LMX1AQ8TE12 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 AC067863.1-201ENST00000494933 530 ntBASIC16.47■□□□□ 0.23
LMX1AQ8TE12 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 SPCS2P1-201ENST00000561636 679 ntBASIC16.47■□□□□ 0.23
LMX1AQ8TE12 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
LMX1AQ8TE12 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 RNU1-129P-201ENST00000384064 167 ntBASIC16.46■□□□□ 0.23
LMX1AQ8TE12 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 CNN2P2-201ENST00000443536 909 ntBASIC16.46■□□□□ 0.23
LMX1AQ8TE12 CNN2P3-201ENST00000450201 906 ntBASIC16.46■□□□□ 0.23
LMX1AQ8TE12 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 U1.21-201ENST00000580816 167 ntBASIC16.46■□□□□ 0.23
LMX1AQ8TE12 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 AL136317.3-201ENST00000618497 906 ntBASIC16.46■□□□□ 0.23
LMX1AQ8TE12 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 AL021920.2-201ENST00000624828 1351 ntBASIC16.46■□□□□ 0.23
LMX1AQ8TE12 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.46■□□□□ 0.23
LMX1AQ8TE12 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC018470.1-201ENST00000624790 3129 ntBASIC16.45■□□□□ 0.22
LMX1AQ8TE12 WASH6P-202ENST00000359512 1437 ntBASIC16.45■□□□□ 0.22
LMX1AQ8TE12 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC131009.4-201ENST00000624048 1740 ntBASIC16.45■□□□□ 0.22
LMX1AQ8TE12 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 DUX4L27-201ENST00000554796 1261 ntBASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 MPDU1-223ENST00000582151 728 ntBASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC005498.2-205ENST00000593218 784 ntBASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC116353.5-201ENST00000638148 1699 ntBASIC16.45■□□□□ 0.22
LMX1AQ8TE12 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LMX1AQ8TE12 FRMD8P1-201ENST00000440433 1524 ntBASIC16.45■□□□□ 0.22
LMX1AQ8TE12 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.44■□□□□ 0.22
LMX1AQ8TE12 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms